Solvatochromic probes for detecting hydrogen-bond-donating solvents

Hydrogen bonding heavily influences conformations, rate of reactions, and chemical equilibria. The development of a method to monitor hydrogen bonding interactions independent of polarity is challenging as both are linked. We have developed two solvatochromic dyes that detect hydrogen-bond-donating solvents. The unique solvatochromism of the triazine architecture has allowed the development of probes that monitor hydrogen-bond-donating species including water

Compact phases of polymers with hydrogen bonding

We propose an off-lattice model for a self-avoiding homopolymer chain with two different competing attractive interactions, mimicking the hydrophobic effect and the hydrogen bond formation respectively. By means of Monte Carlo simulations, we are able to trace out the complete phase diagram for different values of the relative strength of the two competing interactions. For strong enough hydrogen bonding, the ground state is a helical conformation, whereas with decreasing hydrogen bonding strength, helices get eventually destabilized at low temperature in favor of more compact conformations resembling $\beta$-sheets appearing in native structures of proteins. For weaker hydrogen bonding helices are not thermodynamically relevant anymore.Comment: 5 pages, 3 figures; revised version published in PR

Three-body Hydrogen Bond Defects Contribute Significantly to the Dielectric Properties of the Liquid Water-Vapor Interface

In this Letter, we present a simple model of aqueous interfacial molecular structure and we use this model to isolate the effects of hydrogen bonding on the dielectric properties of the liquid water-vapor interface. By comparing this model to the results of atomistic simulation we show that the anisotropic distribution of molecular orientations at the interface can be understood by considering the behavior of a single water molecule interacting with the average interfacial density field via an empirical hydrogen bonding potential. We illustrate that the depth dependence of this orientational anisotropy is determined by the geometric constraints of hydrogen bonding and we show that the primary features of simulated orientational distributions can be reproduced by assuming an idealized, perfectly tetrahedral hydrogen bonding geometry. We also demonstrate that non-ideal hydrogen bond geometries are required to produce interfacial variations in the average orientational polarization and polarizability. We find that these interfacial properties contain significant contributions from a specific type of geometrically distorted three-body hydrogen bond defect that is preferentially stabilized at the interface. Our findings thus reveal that the dielectric properties of the liquid water-vapor interface are determined by collective molecular interactions that are unique to the interfacial environment.Comment: 5 pages, 4 figure, S

Intermolecular N-H...O=C hydrogen bonding in the crystal structure of 6-amino-1,3-dimethyluracil

The 6-amino- 1,3-dimethyluracil molecule [6-amino- 1,3- dimethyl-2,4(1H,3H)-pyrimidinedione], C6H9N302 (I), lies on a crystallographic mirror plane and participates in an extensive two-dimensional hydrogen-bonding network in the solid state. Each molecule is involved in N-- H...O=C hydrogen bonding involving the amino and carbonyl gr. oups, with O...N separations of 2.894 (3) and 2.904 (3) A

Adhesion theory review

Bonding theories reviewed include physical adsorption, hydrogen bonding, chemisorption and surface energy; bond failure mechanisms include phase discontinuity, swelling and corrosion. Concept of bond failure by water desorption is introduced and discussed